The Method of Grace in the Gospel Redemption
by John Flavel
File 26
(... continued from file 25)

Sermon 24. 
Of the Manner and Importance of the Spirit's Indwelling. 
1 John 3: 24. 
-- And hereby we know that he abideth in us, by the Spirit which he 
has given us. 
    THE apostle in this chapter is engaged in a very trying 
discourse; his scope is to discriminate the spirits and states of 
sincere believers, from merely nominal and pretended Christians; 
which he attempts not to do by any thing that is external, but by 
the internal effects and operations of the Spirit of God upon their 
hearts. His enquiry is not into those things which men profess, or 
about the duties which they perform, but about the frames and 
tempers of their hearts, and the principles by which they are acted 
in religion. According to this test, he puts believers upon the 
search and study of their own hearts; calls them to reflect upon the 
effects and operations of the Spirit of God, wrought within their 
own souls, assuring them, that these gracious effects, and the 
fruits of the Spirit in their hearts, will be a solid evidence unto 
them of their union with Jesus Christ, amounting to much more than a 
general, conjectural ground of hope, under which it is possible 
there may subesse falsum, lurk a dangerous and fatal mistake: But 
the gracious effects of the Spirit of God within them, are a 
foundation upon which they may build the certainty and assurance of 
their union with Christ: Hereby we know that he abideth in us, by 
the Spirit which he has given us. In which words we have three 
things to consider, viz. 
    1. The thing to be tried, our union with Christ. 
    2. The trial of it, by the giving of his Spirit to us. 
    3. The certainty of the trial this way: Hereby we know, 
    First, The thing to be tried; which is indeed the greatest and 
weightiest matter that can be brought to trial in this world, or in 
that to come, namely, our union with Christ, expressed here by his 
abiding in us; a phrase clearly expressing the difference betwixt 
those who, by profession and common estimation, pass for Christians 
among men, though they have no other union with Christ, but by an 
external adhesion to him in the external duties of religion, and 
those whose union with Christ is real, vital, and permanent, by the 
indwelling of the Spirit of Christ in their souls. John 15: 5, 6. 
opens the force and importance of this phrase, "I am the vine, ye 
are the branches; he that abideth In me and I in him, the same 
bringeth forth much fruit: If a man abide not in me, he is cast 
forth as a branch, and is withered." The thing then to be tried is, 
Whether we stand in Christ as dead branches in a living stock, which 
are only bound to it by external ligatures or bonds that hold them 
for a while together; or whether our souls have a vital union and 
coalition with Christ, by the participation of the living sap of 
that blessed root? 
    Secondly, The trial of this union, which is by the giving of 
the Spirit to us: The Spirit of Christ is the very bond of union 
betwixt him and our souls. I mean not that the very person of the 
Spirit dwelleth in us, imparting his essential properties to us; it 
were a rude blasphemy so to speak; but his saving influences are 
communicated to us in the way of sanctifying operations; as the sun 
is said to come into the house, when his beams and comforting 
influence come there. Nor yet must we think that the graces or 
influences of the Spirit abide in us in the self-same measure and 
manner they do in Christ; "for God giveth not the Spirit to him by 
measure;" in him all fulness dwells. He is anointed with the Spirit 
above his fellows; but there are measures and proportions of grace 
differently communicated to believers by the same Spirit; and these 
communicated graces, and real operations of the Spirit of grace in 
our hearts, do undoubtedly prove the reality of our union with 
Christ; as the communication of the self-same vital juice or sap of 
the stock, to the branch whereby it lives, and brings forth fruit of 
the same kind, certainly proves it to be a real part or a member of 
the same tree. 
    Thirdly, Which brings us to a third thing; namely, the 
certainty of the trial this way, "en toutoi ginoskomen", in this, or 
by this we know: We so know that we cannot be deceived. To clear 
this, let us consider two things in grace, viz. 
    1. Somewhat constitutive of its being. 
    2. Somewhat manifestative of its being. 
    There is something in grace which is essential, and 
constitutive of its being; and somewhat that flows from grace, and 
is manifestative of such a being: We cannot immediately and 
intuitively discern the essence of grace, as it is in its simple 
nature. So God only discerns it, who is the author of it; but we may 
discern it mediately and secondarily, by the effects and operations 
of it. Could we see the simple essence of grace, or intuitively 
discern our union with Christ, our knowledge would be demonstrative, 
a priori ad posterius, by seeing effects, as they are lodged in the 
cause: But we come to know the being of grace, and the reality of 
our union with Christ, a posteriori, by ascending in our knowledge 
from the effects and operations, to their true cause and being. 
    And, accordingly, God has furnished us with a power of self- 
intuition and reflection; whereby we are able to turn it upon our 
own hearts, and make a judgement upon ourselves, and upon our own 
acts. The soul has not only power to project, but a power also to 
reflect upon its own actions; not only to put forth a direct act of 
faith upon Jesus Christ, but to judge and discern that act also, 2 
Tim. 1: 12. I know whom I have believed: And this is the way in 
which believers attain their certainty and knowledge of their union 
with Christ: from hence the observation will be, 
    Doct. That interest in Christ may be certainly gathered and 
concluded from the gift of the Spirit to us: "No man (saith the 
apostle) has seen God at any time; if we love one another, God 
dwelleth in us, and his love is perfected in us: Hereby know we that 
we dwell in him, and he in us, because he has given us of his 
Spirit," 1 John 4: 12, 18. The being of God is invisible, but the 
operations of his Spirit in believers, are sensible and discernible. 
The soul's union with Christ is a supernatural mystery, yet it is 
discoverable by the effects thereof, which are very perceptible in 
and by believers. 
    Two things require explication and confirmation in the 
doctrinal part of this point. 
    1. What the giving of the Spirit imports and signifies. 
    2. How it evidences the soul's interest in Jesus Christ. 
    First, As to the import of this phrase, we are to enquire what 
is meant by the Spirit, and what by the giving of the Spirit. 
    Now the Spirit is taken in scripture two ways, viz. 
    Essentially, or personally. 
    In the first sense it is put for the Godhead, 1 Tim. 3: 16. 
Justified in the Spirit, i.e. By the power of his divine nature, 
which raised him from the dead. In the second sense it denotes the 
third person, or subsistence in the glorious and blessed Trinity; 
and to him this word Spirit is attributed, sometimes properly in the 
sense before mentioned, as denoting his personality; at other times 
metonymically, and then it is put for the effects, fruits, graces, 
and gifts of the Spirit communicated by him unto men, Eph. 5: 11 Be 
ye filled with the Spirit. Now the fruits or gifts of the Spirit are 
    1. Common and assisting gifts: Or, 
    2. Special and sanctifying gifts. 
    In the last sense and signification, it must be taken in this 
place; for, as to the common assisting and ministering gifts of the 
Spirit, they are bestowed promiscuously upon one as well as another; 
such gifts in an excellent degree and a large measure, are found in 
the unregenerate, and therefore can never amount to a solid evidence 
of the soul s union with Christ: but his special sanctifying gifts, 
being the proper effect and consequent of that union, must needs 
strongly prove and confirm it. In this sense therefore we are to 
understand the Spirit in this place; and by giving the Spirit to us, 
we are to understand more then the coming of the Spirit upon us: The 
Spirit of God is said to come upon men in a transient way, for their 
present assistance in some particular service, though in themselves 
they be unsanctified persons: Thus the Spirit of God came upon 
Balaam, Num. 24: 2. enabling him to prophesy of things to come: And, 
although those extraordinary gifts of the Spirit be now ceased, yet 
the Spirit ceaseth not to give his ordinary assistances unto men, 
both regenerate and unregenerate, 1 Cor. 12: 8, 9, 10, 31. compared: 
But, whatever gifts he gives to others, he is said to be given, to 
dwell, and to abide only in believers, 1 Cor. 3: 6. "Know ye not 
that ye are the temple of God, and that the Spirit of God dwelleth 
in you?" An expression denoting both his special property in them, 
and gracious familiarity with them. There is a great difference 
betwixt the assisting and the indwelling of the Spirit; the one is 
transient, the other permanent. That is a good rule the schoolmen 
give us, Illa tantum dicuntur inesse, quae insunt per modum quietis: 
those things are only said to be in a man, which were in him by way 
of rest and permanency, and so the Spirit is in believers: Therefore 
they are said to live in the Spirit, Gal. 5: 26. to be led by the 
Spirit, ver. 18. to be in the Spirit, and the Spirit to dwell in 
them, Rom. 8: 9. And so much of the first thing to be opened, viz. 
What we ale to understand by the giving of the Spirit. 
    Secondly, In the next place we are to enquire and satisfy 
ourselves, how this giving of the Spirit evidently proves and 
strongly concludes that soul's interest in Christ unto whom he is 
given: and this will evidently appear by the consideration of these 
five particulars. 
    1. The Spirit of God in believers is the very bond by which 
they are united unto Christ: If therefore we find in ourselves the 
bond of union, we may warrantably conclude, that we have union with 
Jesus Christ: This is evidently held forth in those words of Christ, 
John 17: 22, 23. "The glory which thou gavest me, have I given them, 
that they may be one, even ns we are one. I in them and thou in me, 
that they may be made perfect in one, and that the world may know 
that thou hast sent me, and hast loved them as thou hast loved me." 
It is the glory of Christ's human nature to be united to the 
Godhead: "This (said Christ) thou gavest me, and the glory thou 
gayest me, I have given them," i.e. By me they are united unto thee. 
And how this is done, he sheweth us more particularly, I in them; 
there is Christ in us, viz. mystically: And thou in me; there is God 
in Christ, viz. hypostatically: So that in Christ, God and believers 
meet in a blessed union: It is Christ's glory to be one with God; it 
is our glory to be one with Christ, and with God by him: But how is 
this done? Certainly no other way but by the giving of his Spirit 
unto us; for so much the phrase, I in them, must needs import: 
Christ is in us by the sanctifying Spirit, which is the bound of our 
union with him. 
    Secondly, The scripture every where makes this giving, or 
indwelling of the Spirit, the great mark and trial of our interest 
in Christ; concluding from the presence of it in us, positively, as 
in the text; and from the absence of it, negatively, as in Rom. 8: 
9. "Now if any man have not the Spirit of Christ, the same is none 
of his," Jude, ver. 19. "Sensual, not having the Spirit." This mark 
therefore agreeing to all believers, and to none but believers, and 
that always, and at all times, it must needs clearly infer the 
soul's union with Christ, in whomsoever it is found. 
    Thirdly, That which is a certain mark of our freedom from the 
covenant of works, and our title to the privileges of the covenant 
of grace, must needs also infer our union with Christ, and special 
interest in him; but the giving or indwelling of the sanctifying 
Spirit in us, is a certain mark of our freedom from the first 
covenant, under which all Christless persons still stand, and our 
title to the special privileges of the second covenant, in which 
none but the members are interested; and, consequently, it fully 
proves our union with the Lord Jesus. This is plain from the 
apostle's reasoning Gal. 4: 6, 7. "And because ye are sons, God has 
sent forth the spirit of his Son into your hearts, crying, Abba 
Father: Wherefore thou art no more a servant, but a son: and if a 
son, then an heir of God, through Christ." The spirit of the first 
covenant was a servile spirit, a spirit of fear and bondage, and 
they that were under that covenant were not sons, but servants; but 
the spirit of the new covenant is a free, ingenuous spirit, acting 
in the strength of God, and those that do so, are the children of 
God; and children inherit the blessed privileges and royal 
immunities contained in that great charter, the covenant of grace: 
they are heirs of God, and the evidence of this their inheritance, 
by virtue of the second covenant, and of freedom from the servitude 
and bondage of the first covenant, is the Spirit of Christ in their 
hearts, crying, Abba Father; So Gal. 5: 18. "If ye be led by the 
Spirit, ye are not under the law." 
    Fourthly, If the eternal decree of God's electing love be 
executed, and the virtues and benefits of the death of Christ 
applied by the Spirit, unto every soul in whom he dwelleth, as a 
spirit of sanctification; then such a giving of the Spirit unto us 
must needs be a certain mark and proof of our special interest in 
Christ; but the decree of God's electing love is executed, and the 
benefits of the blood of Christ are applied to every soul in whom he 
dwelleth, as a spirit of sanctification. This is plain from 1 Pet. 
1: 2. "Elect according to the foreknowledge of God the Father, 
through sanctification of the Spirit unto obedience, and sprinkling 
of the blood of Jesus Christ:" Where you see both God's election 
executed, and the blood of Jesus sprinkled or applied unto us by the 
Spirit, which is given to us as a Spirit of sanctification. There is 
a blessed order of working observed as proper to each person in the 
Godhead; the Father electeth, the Son redeemeth, the Spirit 
sanctifieth. The Spirit is the last efficient in the work of our 
salvation; what the Father decreed, and the Son purchased, that the 
Spirit applieth; and so puts the last hand to the complete salvation 
of believers. And this some divines give as the reason why the sin 
against the Spirit is unpardonable, because he being the last agent, 
in order of working, if the heart of a man be filled with enmity 
against the Spirit, there can be no remedy for such a sin; there is 
no looking back to the death of Christ, or to the love of God for 
remedy. This sin against the Spirit is that obex infernalis, the 
deadly stop and bar to the whole work of salvation; Oppositely, 
where the Spirit is received, obeyed, and dwelleth in the way of 
sanctification; into that soul the eternal love of God, the 
inestimable benefits of the blood of Christ run freely, without any 
interruption; and, consequently, the interest of such a soul in 
Jesus Christ is beyond all dispute. 
    Fifthly, The giving of the Spirit to us, or his residing in us, 
as a sanctifying Spirit, is everywhere in scripture made the pledge 
and earnest of eternal salvation, and consequently must abundantly 
confirm and prove the soul's interest in Christ, Eph. 1: 13, 14. "In 
whom also after that ye believed, ye were sealed with that holy 
Spirit of promise; which is the earnest of our inheritance," &c. So, 
2 Cor. 1: 22. "who has also sealed us, and given the earnest of the 
Spirit in our hearts." And thus you have the point opened and 
confirmed. The use of all followeth: 
    Use. Now the only use I make of this point shall be that which 
lieth directly, both in the view of the text, and of the design for 
which it was chosen; namely, by it to try and examine the truth of 
our interest in, and the validity of our claim to Jesus Christ. In 
pursuance of which design, I shall first lay down some general 
rules, and then propose some particular trials. 
    First, I shall lay down some general rules for the due 
information of our minds in this point, upon which so much depends. 
    Rule 1. Though the Spirit of God be given to us, and worketh in 
us, yet he worketh not as a natural and necessary, but as a free and 
arbitrary agent: He neither assists, nor sanctifies, as the fire 
burneth, ad ultimuam sui posse, as much as he can assist or 
sanctify, but as much as he pleaseth: dividing to every man 
severally as he will," 1 Cor. 12: 11. Bestowing greater measures of 
gifts and graces upon some than upon others; and assisting the same 
person more at one season than another; and all this variety of 
operation floweth from his own good pleasure. His grace is his own, 
he may give it as he pleaseth. 
    Rule 2. There is a great difference in the manner of the 
Spirit's working before and after the work of regeneration. Whilst 
we are unregenerate, he works upon us as upon dead creatures that 
work not at all with him; and what motion there is in our souls, is 
a counter-motion to the Spirit; but after regeneration it is not so, 
he then works upon a complying and willing mind; we work, and he 
assists, Rom. 8: 26. Our conscience witnesseth, and he beareth 
witness with it, Rom. 8: 16. It is therefore an error of dangerous 
consequence to think that sanctified persons are not bound to stir 
and strive in the way of duty, without a sensible impulse, or 
preventing motion of the Spirit, Isa. 64: 7. 
    Rule 3. Though the Spirit of God be given to believers, and 
worketh in them, yet believers themselves may do or omit such things 
as may obstruct the working, and obscure the very being of the 
Spirit of God in them. Ita notis tractat, ut a nobis tractatus: He 
dealeth with us in his evidencing and comforting work, as we deal 
with him in point of tenderness and obedience to his dictates; there 
is a grieving, yea, there is a quenching of the Spirit by the lusts 
and corruptions of those hearts in which he dwelleth; and though he 
will not forsake his habitation, as a Spirit of sanctification, yet 
he may for a time desert it as a Spirit of consolation, Psa]. 2: 11. 
    Rule 4. Those things which discover the indwelling of the 
Spirit in believers are not so much the matter of their duties, or 
substance of their actions, as the more secret springs, holy aims, 
and spiritual manner of their doing or performing of them. It is not 
so much the matter of a prayer, the neat and orderly expressions in 
which it is uttered, as the inward sense and spiritual design of the 
soul; it is not the choice of elegant words, whereby our conceptions 
are clothed, or the copiousness of the matter with which we are 
furnished, for even a poor stammering tongue, and broken language, 
may have much of the Spirit of God in it. This made Luther say, he 
saw more excellency in the duty of a plain rustic Christian, than in 
all the triumphs of Caesar and Alexander. The beauty and excellency 
of spiritual duties is an inward hidden thing. 
    Rule 5. All the motions and operations of the Spirit are always 
harmonious, and suitable to the written word, Isa. 8: 20. "To the 
law and to the testimony, if they speak not according to this word, 
it is because there is no light in them." The scriptures are by the 
inspiration of the Spirit, therefore this inspiration into the 
hearts of believers must either substantially agree with the 
scriptures, or the inspiration of the Spirit be self repugnant, and 
contradictory to itself. It is very observable, that the works of 
grace wrought by the Spirit in the hearts of believers, are 
represented to us in scripture, as a transcript, or copy of the 
written word, Jer. 31: 33. "I will write my law in their hearts." 
Now, as a true copy answers the original, word for word, letter for 
letter, point for point; so do the works of the Spirit in our souls 
harmonise with the dictates of the Spirit in the scriptures; 
whatsoever motion therefore shall be found repugnant thereto, must 
not be fathered upon the Spirit of God, but laid at the door of its 
proper parents, the spirit of error and corrupt nature. 
    Rule 6. Although the works of the Spirit, in all sanctified 
persons, do substantially agree, both with the written word, and 
with one another, (as ten thousand copies, penned from one original, 
must needs agree within themselves;) yet as to the manner of 
infusion and operation, there are found many circumstantial 
differences. The Spirit of God does not hold one and the same method 
of working upon all hearts: The work of grace is introduced into 
some souls with more terror and trouble for sin, than it is in 
others; he wrought upon Paul one way, upon Lydia in another way; he 
holds some much longer under terrors and troubles than he does 
others; inveterate and more profane sinners find stronger troubles 
for sin, and are held longer under them, than those are, into whose 
heart grace is more early and insensibly infused by the Spirit's 
blessing upon religious education; but as these have less trouble 
than the other at first, so commonly they have less clearness, and 
more doubts and fears about the work of the Spirit afterwards. 
    Rule 7. There is a great difference found betwixt the 
sanctifying and the comforting influences of the Spirit upon 
believers, in respect of constancy and permanency. His sanctifying 
influences abide for ever in the soul, they never depart; but his 
comforting influences come and go, and abide not long upon the 
hearts of believers. Sanctification belongs to the being of a 
Christian, consolation only to his well-being: The first is fixed 
and abiding, the latter various and inconstant. Sanctification 
brings us to heaven hereafter, consolation brings heaven unto us 
here; our safety lies in the former, our cheerfulness only in the 
latter. There are times and seasons, in the lives of believers, 
wherein the Spirit of God does more signally and eminently seal 
their spirits, and ravish their hearts with joy unspeakable. But 
what Bernard speaketh is certainly true in the experience of 
Christians: "It is a sweet hour, and it is but an hour; a thing of 
short continuance: the relish of it is exceeding sweet, but it is 
not often that Christians taste it." And so much may suffice for the 
general rules about the inbeing and workings of the Spirit in 
believers, for the better information of our understandings, and 
prevention of mistakes in this matter: I shall next, according to 
promise, lay down the particular marks and trials by which we may 
discern whether God has given us his Spirit or no, by which grown 
Christians, when they are in a due composed frame, may, by the 
assistance of the Spirit of God, (for which therefore they are bound 
to pray), discern his indwelling and working in themselves. 
    Evidence 1. In whomsoever the Spirit of Christ is a Spirit of 
sanctification, to that man or woman he has been, more or less, a 
Spirit of conviction and humiliation. This is the order which the 
Spirit constantly observes in adult or grown converts, John 16: 8, 
9. "And when he is come, he will reprove the world of sin, and of 
righteousness, and of judgement: of sin because they believe not on 
me." This, you see, is the method he observes all the world over; he 
shall reprove or convince the world of sin. Conviction of sin has 
the same respect unto sanctification, as the blossoms of trees have 
to the fruits that follow them: A blossom is but fructus 
imperfectus, et ordinabilis; an imperfect fruit in itself, and in 
order to a more perfect and noble fruit. Where there are no 
blossoms, we can expect no fruit; and where we see no conviction of 
sin, we can expect no conversion to Christ. Has then the Spirit of 
God been a Spirit of conviction to thee? Hath he more particularly 
convinced thee of sin, because thou hast not believed on him? i. e. 
has he shown thee thy sin and misery, as an unbeliever? Not only 
terrified and affrighted thy conscience with this or that more 
notorious act of sin, but fully convinced thee of the state of sin 
that thou art in by reason of thy unbelief, which, holding thee from 
Christ, must needs also hold thee under the guilt of all thy other 
sins. This gives, at least, a strong probability that God hath given 
thee his Spirit, especially when this conviction remains day and 
night upon thy soul, so that nothing but Christ can give it rest, 
and consequently the great enquiry of thy soul is after Christ, and 
none but Christ. 
    Evidence 2. As the Spirit of God has been a convincing, so he 
is a quickening Spirit, to all those to whom he is given; Rom. 8: 2. 
"The law of the Spirit of life in Christ Jesus has made me free from 
the law of sin and death:"  He is the Spirit of life, i. e. the 
principle of spiritual life in the souls whom he inhabiteth; for, 
uniting them to Christ, he unites them to the fountain of life, and 
this spiritual life, in believers, manifests itself as the natural 
life does in vital actions and operations. When the Spirit of God 
comes into the Soul of a man that was dead and senseless under sin, 
"O (saith he) now I begin to feel the weight and load of sin, Rom. 
7: 24. now I begin to hunger and thirst after Christ and his 
ordinances, 1 Pet. 2: 2. now I begin to breathe after God in 
spiritual prayer",  Acts 9: 11. Spiritual life has its spiritual 
senses, and suitable operations. O think upon this you that cannot 
feel any burden in sin, you that have no hungerings or thirstings 
after Christ; how can the Spirit of God be in you? I do not deny but 
there may, at some times, be much deadness and senselessness upon 
the hearts of Christians, but this is their disease, not their 
nature; it is but at some times, not always, and when it is so with 
them, they are burdened with it, and complain of it as their 
greatest affliction in this world; their spirits are not easy and at 
rest, in such a condition as yours are; their spirits are as a bone 
out of joint, an arm dislocated, which cannot move any way without 
    Evidence 3. Those to whom God giveth his Spirit bare a tender 
sympathy with all the interests and concernments of Christ. This 
must needs be so, if the same Spirit which is in Christ dwelleth 
also in thy heart; if thou be a partaker of his Spirit, then what he 
loves, thou lovest, and what he hates, thou hatest. This is a very 
plain case; even in nature itself, we find that the many members of 
the same natural body being animated by one and the same spirit of 
life, "whether one member suffer, all the members suffer with it; or 
one member be honoured, all the members rejoice with it: Now ye are 
the body of Christ, and members in particular," 1 Cor. 12: 26, 27. 
For look, as Christ, the head of that body is touched with a tender 
sense and feeling of the miseries and troubles of his people, he is 
persecuted when they are persecuted, Acts 9: 4. so they that have 
the Spirit of Christ in them, cannot be without a deep and tender 
sense of the reproach and dishonours that are done to Christ: This 
is as it were a sword in their bones," Psal. 42: 3. If his public 
worship cease, or the assemblies of his people are scattered; it 
cannot but go to the hearts of all, in whom the Spirit of Christ is: 
"They will be sorrowful for the solemn assemblies; the reproach of 
them will be a burden," Zeph. 3: 18. Those that have the Spirit of 
Christ do not more earnestly long after any one thing in this world, 
than the advancement of Christ's interest by conversion and 
resonation in the kingdoms of the earth, Psal. 14: 8, 4. Paul could 
rejoice that Christ was preached, though his own afflictions were 
increased, Phil. 1: 16, 18. and John could rejoice that Christ 
increased, though he himself decreased; yet therein was his joy 
fulfilled, John 3:!!9. So certainly the concernments of Christ must 
and will touch that heart which is the habitation of his Spirit. I 
cannot deny, but even a good Baruch may be under a temptation to 
seek great things for himself, and be too much swallowed up in his 
own concernments, when God is plucking up and breaking down, Jer. 
14: 4, 5. But this is only the influence of a temptation: the true 
temper and spirit of a believer inclines him to sorrow and mourning, 
when things are in this sad posture: Ezek. 9: 4. "Go through the 
midst of the city, through the midst of Jerusalem, and set a mark 
upon the foreheads of the men that sigh, and that cry for all the 
abominations that be done in the midst thereof." 
    O reader, lay thine hand upon thine heart: Is it thus with 
thee? Dost thou sympathise with the affairs and concernments of 
Christ in the world? or, carest thou not which way things go with 
the people of God, and gospel of Christ, so long as thine own 
affairs prosper, and all things are well with thee? 
    Evidence 4. Wherever the Spirit of God dwelleth, he does in 
some degree, mortify and subdue the evils and corruptions of the 
soul in which he resides. This Spirit lusteth against the flesh, 
Gal. 5: 7. and believers, "through the Spirit, do mortify the deeds 
of the body," Rom. 8: 13. This is one special part of his 
sanctifying work. I do not say he kills and subdues sin in 
believers, as that it shall never trouble or defile them any more: 
No; that freedom be longs to the perfect state in heaven, but its 
dominion is taken away, though its life be prolonged for a season. 
It lives in believers still, but not upon the provision they 
willingly make to fulfil the lust of it, Rom. 13: 27. The design of 
every true believer, is co-incident with the design of the Spirit, 
to destroy and mortify corruption: They long after the extirpation 
of it, and are daily in the use of all sanctified means and 
instruments, to subdue and destroy it; the workings of their 
corruption are the afflictions of their souls, Mom. 7: 21. "O 
wretched man that I am, who shall deliver me from the body of this 
death?" And there is no one thing that sweetens the thoughts of 
death to believers (except the sight and full enjoyment of God) more 
than their expected deliverance from sin does. 
    Evidence 5. Wherever the spirit of God dwelleth in the way of 
sanctification, in all such he is the Spirit of prayer and 
supplication, Rom. 8: 26. "Likewise the Spirit also helpeth our 
infirmities, for we know not what we should pray for as we ought, 
but the Spirit itself maketh intercession for us, with groanings 
which cannot be uttered:" Wherever he is poured out as the Spirit of 
grace, he is also poured out as the Spirit of supplication, Zech. 
12: 10. His praying and his sanctifying influences are undivided. 
There is a threefold assistance that the Spirit gives unto 
sanctified persons in prayer. He helps them before they pray, by 
setting an edge upon their desires and affections: He helps them in 
prayer, by supplying matters of request to then, teaching them what 
they should ask of God: He assisteth them in the manner of prayer, 
supplying them with suitable affections, and helping them to be 
sincere in all their desires to God. It is he that humbles the pride 
of their hearts, dissolves, and breaks the hardness of their hearts; 
Out of deadness makes them lively; out of weakness makes them 
strong. He assisteth the spirits of believers after prayer, helping 
them to faith and patience, to believe, and wait for the returns and 
answers of their prayers. O reader, reflect upon thy duties, 
consider what spirituality, sincerity, humility, broken-heartedness, 
and melting affections after God, are to be found in thy duties: Is 
it so with thee? Or dost thou hurry over thy duties as all 
interruption to thy business and pleasures? Are they an ungrateful 
task, imposed upon thee by God, and thy own conscience? Are there no 
hungerings and thirstings after God in thy soul? Or, if there be any 
pleasure arising to thee out of prayer, is it not from the 
ostentation of thy gifts? If it be so, reject sadly upon the carnal 
state of thy heart; these things do not speak the Spirit of grace 
and supplication to be given thee. 
    Evidence 6. Wherever the Spirit of grace inhabits, there is an 
heavenly, spiritual frame of fining accompanying, and evidencing the 
indwelling of the Spirit, Rom. 8: 5, 6. "For they that are after the 
flesh, do mind the things of the flesh; but they that are after the 
Spirit, the things of the Spirit: for to be carnally minded is 
death: but to be spiritually minded is life and peace. By the mind, 
understand the musings, reasonings, yea, and the cares, fears, 
delights and pleasures of the soul, which follow the workings and 
meditations of the mind. As these are, so are we; if these be 
ordinarily and habitually taken up, and exercised about earthly 
things, then is the frame and state of the man carnal, and earthly: 
The workings of every creature follow the being and nature of it. If 
God, Christ, heaven, and the world to come, engage the thoughts and 
affections of the soul, and the temper of such a soul is spiritual, 
and the Spirit of God dwelleth there; this is the life of the 
regenerate, Phil. 3: 20. "Our conversation is in heaven;" and such a 
frame of heart is life and peace: A serene, placid, and most 
comfortable life. No pleasures upon earth, no gratifications of the 
senses, do relish and savour, as spiritual things do. Consider, 
therefore, which way thy heart ordinarily works, especially in thy 
solitudes and hours of retirement. These things will be a great 
evidence for, or against thy soul. David could say "How precious are 
thy thoughts unto me, O God! How great is the sum of them: if I 
should count them, they, are more in number than the sand; when I 
awake, I was still with thee," Psal. 139: 17, 18. Yet it must be 
acknowledged, for the relief of weaker Christians, that there is a 
great difference and variety found in this matter, among the people 
of God: For the strength, steadiness, and constancy of a spiritual 
mind, result from the depth and improvement of sanctification: The 
more grace, still the more evenness, spirituality, and constancy 
there is in the motions of the heart after God. The minds of weak 
Christians are more easily entangled in earthly vanities, and more 
frequently diverted by inward corruptions; yet still there is a 
spiritual Pondus, inclination and bent of their hearts towards God; 
and the vanity and corruption which hinders their communion with him 
are their greatest grief and burthen under which they groan in this 
    Evidence 7. Those to whom the Spirit of grace is given, are led 
by the Spirit, Rom. 8: 11. "As many as are led by the Spirit of God, 
they are the sons of God:" Sanctified souls give themselves up to 
the government and conduct of the Spirit; they obey his voice, beg 
his direction, follow his motions, deny the solicitations of flesh 
and blood, in obedience to him, Gal. 1: 16. And they that do so, 
they are the sons of God. It is the office of the Spirit to guide us 
into all truth; and it is our great duty to follow his guidance. 
Hence it is, that in all enterprises and undertakings, the people of 
God so earnestly beg direction and counsel from him. "Lead me, O 
Lord, in thy righteousness, (saith David) make thy way straight 
before my face," Psal. 5: 8. They dare not, in doubtful cases, lean 
to their own understandings; yea, in points of duty, and in points 
of sin, they dare not neglect the one, or commit the other, against 
the convictions and persuasions of their own consciences; though 
troubles and sufferings be unavoidable in that path of duty, when 
they have balanced duties with sufferings, in their most serious 
thoughts, the conclusion and result wily still be, it is better to 
obey God, than man, the dictates of the Spirit, rather than the 
counsels of flesh and blood. 
    But, before I leave this point, I reckon myself a debtor unto 
weak Christians, and shall endeavour to give satisfaction to some 
special doubts and fears, with which their minds are ordinarily 
entangled in this matter; for it is a very plain case, that many 
souls have the presence and sanctification of the Spirit without the 
evidence and comfort thereof. Divers thing are found in believers, 
which are so many fountains of fears and doubts to them. And, 
    Objection 1. First, I greatly doubt the Spirit of God is not in 
me, (saith a poor Christian) because of the great darkness and 
ignorance which clouds my soul; for I read, 1 John 2: 27. that he 
enlighteneth the soul which he inhabiteth. "The anointing which ye 
have received of him abideth in you, and ye need not that any man 
teach you, but as the same anointing teacheth you of all things," 
&c. but alas, my understanding is weak and cloudy, I have need to 
learn of the meanest of God's people: This only I know, that I know 
nothing as I ought to know. 
    Sol. Two things are to be regarded in spiritual knowledge; viz. 
the quantity, and the efficacy thereof. Your condition does not so 
much depend upon the measures of knowledge; for, haply, you are 
under many natural disadvantages, and want those helps and means of 
increasing knowledge, which others plentifully enjoy. It may be you 
have wanted the helps of education, or have been incumbered by the 
necessities and cares of the world, which have allowed you but 
little leisure for the improvement of your minds: But if that which 
you do know, be turned into practice and obedience, Col. 1: 9, 10. 
If it have influence upon your hearts, and transform your affections 
into a spiritual frame and temper, 2 Cor. 3: 17, 18. If your 
ignorance humble you, and drive you to God daily for the increase of 
knowledge, one drop of such knowledge of Christ, and yourselves as 
this, is more worth than a sea of human, moral, unsanctified, and 
speculative knowledge. Though you know but little, yet that little, 
being sanctified, is of great value: Though you know but little, 
time was when you knew nothing of Jesus Christ, or the state of your 
own souls. In a word, though you know but little, that little you do 
know will be still increasing, "like the morning light, which 
shineth more and more unto the perfect day," Prov. 4: 18. If thou 
knowest so much as brings thee to Christ, thou shalt shortly be 
where thy knowledge shall be as the light at noon day. 
    Object. 2. I sometimes find my heart raised, and my affections 
melted in duties, but I doubt it is in a natural way, and not from 
the Spirit of God: could I be assured those motions of my heart were 
from the Spirit of grace, and not merely a natural thing, it would 
be a singular comfort and satisfaction to me. 
    Sol. First, Consider whether this be not the ground of your 
fear and doubting, because you are fain to take pains in the way of 
meditation, prayer, and other duties, to bring your hearts to relish 
and savour the things of God; whereas, it may be, you expect your 
spiritual enlargements and comforts should flow in upon you 
spontaneously, and drop from heaven immediately of their own accord, 
without any pains or industry of yours. Here may be, (and probably 
is) a great mistake in this matter; for the Spirit of God works in 
the natural method, wherein affections use to be raised, and makes 
use of such duties as meditation and prayer, as instruments to do 
that work by, Ezek. 36: 57. So David was forced to reason with, and 
chide his own heart, Psal. 42: 5. Thy comfort and enlargement may 
nevertheless be the fruit of the Spirit, because God makes it spring 
up, and grow upon thy duties. 
    Secondly, Take this as a sure rule, Whatsoever rises from self, 
always aims at, and terminates in self. This stream cannot be 
carried higher than the fountain; if therefore thy aim, and end in 
striving for affections and enlargements in duty, be only to win 
applause from men, and appear to be what in reality thou art not, 
this, indeed, is the fruit of nature, and a very corrupt and 
hypocritical nature; but if thy heart be melted, or desire to be 
melted in the sense of the evil of sin, in order to the further 
mortification of it; and, under the apprehensions of the free grace 
and mercy of God in the pardon of sin. in order to the engaging of 
thy soul more firmly to him; if these, or such like, be thy ends and 
designs, or be promoted and furthered by thine enlargements and 
spiritual comforts, never reject them as the mere fruits of nature: 
A carnal root cannot bring forth such fruits as these. 
    Object. 3. Upon the contrary, spiritual deadness, and 
indisposedness to duties, and to those especially which are more 
secret, spiritual, and self-denying than others, is the ground upon 
which many spiritual souls, who are yet truly gracious, do doubt the 
indwelling of the Spirit in them. 0, saith such a soul, if the 
Spirit of God be in me, Why is it thus? Could my heart be so dead, 
so backward and averse to spiritual duties? No; these things would 
be my meat and my drink, the delights and pleasures of my life. 
    Sol. First, These things indeed are very sad, and argue thy 
heart to be out of frame, as the body is, when it cannot relish the 
most desirable meats or drinks: But the question will be, how thy 
soul behaves itself in such a condition as this is? whether this be 
easy or burdensome to he borne by thee? and if thou complain under 
it as a burden; then what pains thou takest to ease thyself, and get 
rid of it? 
    Secondly, Know also, that there is a great difference betwixt 
ritual death, and spiritual deadness; the former is the state of the 
unregenerate, the latter is the disease and complaint of many 
thousand regenerate souls: If David had not felt it as well as thee, 
he would never have cried out nine times in the compass of one 
Psalm, Quicken me, quicken me. Besides, 
    Thirdly, Though it be of ten, it is not so always with thee; 
there are seasons wherein the Lord breaks in upon thy heart, 
enlarges thy affections, and sets thy soul at liberty; to which 
times thou wilt do well to have an eye, in these dark and cloudy 
    Object. 4. But the Spirit of God is the comforter, as well as a 
sanctifier: He does not only enable men to believe, but after they 
believe, he also seals them, Eph 1: 13. But I walk in darkness, and 
am a stranger to the sealing and comforting work of the Spirit: How 
therefore can I imagine the Spirit of God should dwell in me, who go 
from day to day in the bitterness of my soul, mourning as without 
the sun? 
    Sol. There is a twofold sealing, and a two-fold comfort: The 
Spirit sealeth both objectively, in the work of sanctification; and 
formally, in giving clear evidence of that work. Thou mayest be 
sealed in the first, whilst thou art not yet sealed in the second 
sense: If so, thy condition is safe, although it be at present 
uncomfortable. And, as to comfort, that also is of two sorts, viz. 
seminal, or actual: in the root, or in the fruit; Light is sown for 
the righteous, Psal 97: 11. though the harvest to reap and gather in 
that joy and comfort be not yet come. And there are many other ways 
beside that of joy and comfort, whereby the indwelling of the Spirit 
may evidence itself in thy soul: If he do not enable thee to 
rejoice, yet if he enable thee sincerely to mourn for sin; if he do 
not enlarge thy heart in comfort, yet if he humble and purge thy 
heart by sorrows: if he deny thee the assurance of faith, and yet 
give thee the dependence of faith, thou hast no reason to call in 
question, or deny the indwelling of the Spirit in thee for that 
    Object. 5. But the apostle saith, "They that walk in the 
Spirit, do not fulfil the lusts of the flesh," Gal. 5: 16. but I 
find myself entangled, and frequently overcome by them: Therefore I 
doubt the Spirit of God is not in me. 
    Sol. It is possible the ground of your doubting may be your 
mistake of the true sense and meaning of that scripture: It is not 
the apostle's meaning in that place, that sin in believers does not 
work, tempt, and oftentimes overcome, and captivate them; for then 
he wound contradict himself in Rom. 7: 28. where he thus complains, 
But I see another law in my members, warring against the law of my 
mind, and bringing me into captivity to the law of sin which is in 
my members." But two things are meant by that expression, "Ye shall 
not fulfil the lusts of the flesh." 
    First, That the principle of grace will give a check to sin in 
its first motions, and cause it to miscarry in the womb, like an 
untimely birth, before it come to its full maturity; it shall never 
be able to gain the full consent of the will, as it does in the 
    Secondly, If, notwithstanding all the opposition grace makes to 
hinder the birth or commission of it, it does yet prevail, and break 
forth into act; yet such acts of sin, as they are not committed 
without regret, so they are followed with shame, sorrow, and true 
repentance: And those very surprisals, and captivities of sin at one 
time, are made cautions and warnings to prevent it at another time 
If it be so with thee, thou cost not fulfil the lusts of the flesh. 
    And now, reader, upon the whole, if upon examination of thy 
heart by these rules, the Lord shall help thee to discern the saving 
work of the Spirit upon thy soul, and thereby thine interest in 
Christ, What a happy man or woman art thou! what pleasure will arise 
to thy soul from such a discovery! look upon the frame of thine 
heart absolutely as it is in itself at present, or comparatively, 
with what once it was, and others still are, and thou wilt find 
enough to transport and melt thy heart within thee: Certainly this 
is the most glorious piece of workmanship that ever God wrought in 
the world upon any man, Eph. 2: 10. The Spirit of God is come down 
from heaven, and has hallowed thy soul to be a temple for him self 
to dwell in; as he has said, "I will dwell in them, and walk in 
them, and I will be their God, and they shall be my people," 2 Cor. 
7: 16. Moreover, this gift of the Spirit is a sure pledge and 
earnest of thy future glory: Time was, when there was no such work 
upon thy soul. And, considering the frame and temper of it, the 
total aversation, strong opposition, and rooted enmity that was in 
it; it is the wonder of wonders, that ever such a work as this 
should be wrought upon such a heart as thine: that ever the Spirit 
of God, whose nature is pure and perfect holiness, should chuse such 
an unclean, polluted, abominable heart to frame an habitation for 
himself there to dwell in; to say of thy soul (now his spiritual 
temple) as he once said of the material temple at Jerusalem, Psal. 
132: 13, 14. &c. The Lord has chosen it, he has desired it for his 
habitation. This is my rest for ever: Here will I dwell; for I have 
desired it." O what has God done for thy soul! 
    Think, reader, and think again: Are there not many thousands in 
the world of more ingenuous, sweet, and amiable dispositions than 
thyself, whom yet the Spirit of God passeth by, and leaveth them as 
tabernacles for Satan to dwell in? Such a one thou lately wast, and 
hadst still remained, if God had not wrought for thee, beyond all 
the expectations and desires of thine own heart. O bless God that 
you have received not the spirit of the world, but the Spirit which 
is of God; that ye might know the things which are freely given unto 
you of God. 

The Method of Grace in the Gospel Redemption
(continued in file 27...)

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